Research Tool Sites for the Molecular Biology

My Favorite Sites

Essential Research Tools
- Tools for the Molecular Biology - Quick Access Table
- EMBOSS - a graphical user interface to the EMBOSS suite of bioinformatics tools. : EMBOSS (European Molecular Biology Open Software Suite) is a suite of free software tools for nucleotide and protein sequence analysis
- All-IN-ONE SEQ-ANALYZER - by Naohiro Inohara
- The CMS Molecular Biology Resource - by Christopher M. Smith at SDSC
- DNA & Protein Analysis Toolkit - Computing Services at The Rockefeller University (USA)
- JaMBW - Java based Molecular Biologist's Workbench
  - List of Java-based Molecular Biology Work Bench sites
- ExPASy Proteomics tools - at Swiss Institute of Bioinformatics (SIB)
- Research Tools: [FRAME] - by Jun Ishikawa at National Institute of Health (Japan) : You can select [NONFRAME]: [JAPANESE-NONFRAME]
DataBases
- GenomeNET: Institute for Chemical Research, Kyoto University Human Genome Center: Kyoto, Institute of Medical Science, University of Tokyo: Tokyo (Japan)
- Restriction Enzyme Database - New England Biolabs, Inc.
Table
Reference Sites
- Entrez - NCBI Entrez Browser (USA)
- The Molecular Biologist's Desk Reference: at NIH: National Institutes of Health (USA)
- NCBI PubMed - A search tool for accessing literature citations and linking to their full-text versions at publishers' Web sites - An experimental service of the National Center for Biotechnology Information (NCBI) at the National Library of Medicine (NLM)
- PaperChase - PaperChase provides 9,337,834 references - MEDLINE | HealthSTAR | AIDSLINE | CANCERLIT
- ingenta - Reference search and document delivery service
- Chemfinder - Chemical Searching and Information Integration
Others
- Frontiers in Bioscience: [ THE VIRTUAL LIBRARY ] [ THE JOURNAL ] - The most informative Web-space
- Schizosaccharomyces pombe & Yeast Sites

World-Wide-Web Sites

All the Virology - by the Garry Laboratory in the Department of Microbiology and Immunology in the School of Medicine at Tulane University (USA)
The Biotechnology Information Center - One of ten information centers at the National Agricultural Library of the US Department of Agriculture: ARS
Computional Biology and Informatics Laboratory - at Pennsylvenia University
Computational Molecular Biology: by the Computational Molecular Biology Section (CMBS) at NIH (USA)
DNA Information and Stock Center: DISC - National Institute of Agrobiological Resources (Japan)
EMBnet: The European Molecular biology network: [ http://ben.vub.ac.be/ | ftp://dbmdec5.ulb.ac.be/ | ]
European Bioinformation Institute (UK)
GenomeNET: Institute for Chemical Research, Kyoto University Human Genome Center: Kyoto, Institute of Medical Science, University of Tokyo: Tokyo (Japan)
Human Genome Center: Institute of Medical Science at The University of Tokyo (Japan)
Image Library of Biological Macromolecules - featured as website of the day on February 19, 1997 by the 'webzine' HMS Beagle.
MRC - Human Genetics Unit - WWW Server(UK)
National Institute for Basic Biology: NIBB (Japan)
Sheffield ChemDex - at University of Sheffield (UK)
Theoretical Biophysics Group - NIH Resource for Concurrent Biological Computing at Beckman Institute for Advanced Science and Technology
UK MRC HGMP Resource Centre - Human Genome Mapping Project Resource Centre (UK)
Weizmann Institute Genome and Bioinformatics: (Israel)

Useful Database Sites

ATCC - American Type Culture Collection
Databases for Molecular Biology - NIH (USA)
DNA Data Bank of Japan: DDBJ - Center for Information Biology of Genetics - SAKURA On-Line Gene Submission (Japan)
DSHB: Developmental Studies Hybridoma Bank under the auspices of the National Institute of Child Health & Human Development (USA)
EMBL DataBase
Escherichia coli Databank - at The Graduate School of Biological Sciences: NAIST (Japan)
E.coli Genetic Stock Center: CGSC - E. coli Stock Center Database at Yale University (USA)
E. coli Genome Project: The purpose of this server is to provide a front-end graphical interface to our FTP site - at University of Wisconsin-Madison (USA)
GenBank Database
A Gene Map of the Human Genome - The Gene Map web site is hosted by the National Center for Biotechnology Information: NCBI (USA)
GenLink - at Washington University (USA)
Online Research Resources - The National Center for Human Genome Research: Genome and Genetic Data at The National Center for Human Genome Research (NCHGR): The Human Genome Project for the National Institutes of Health (NIH)
MPDB: The Molecular Probe Data Base - The Molecular Probe Data Base (MPDB) contains information on ca. 4000 synthetic oligonucleotides with a sequence of up to 100 nucleotides - at The Interlab Project (Italy)
National Collection of Yeast Cultures - at Institute of Food (UK)
NDB: Nucleic Acid Database - The goal of the Nucleic Acid Database Project is to assemble and distribute structural information about nucleic acids at The State University of New Jersey (USA)
REBASE: Restriction Enzyme Database - by Richard J. Roberts
Restriction Enzyme Information Resources - by Mary Hoenecke and Carolyn Stock at Promega Corporation (USA)
SEQNET - The U.K. academic communitiesSEQuence NETwork computer for molecular biologists at Daresbury Laboratory (UK)
TIGR Database- TDB: a collection of molecular biology databases (USA)
TIGR Human Genome Sequencing Projects - at The Institute for Genomic Research: TIGR (USA)

Protein Database and Resources
- ENTREZ: Protein and nucleotide database (NCBI)
- ENZYME: Enzyme nomenclature database
- Molecules R US: Web interface for accessing molecular structure data in PDB
- PRO-SITE: Dictionary of protein sites and patterns
- Protein Data Bank: An Information Portal to Biological Macromolecular Structures
- PROLYSIS: A protease and protease inhibitor Web server by Thierry MOREAU (France)
- SCOP: Structural Classification of Proteins. Release 1.32. 4432 PDB Entries (all through May 96). 8330 Domains. 169 Literature References. - at MRC Laboratory (UK)
- SWISS-PROT: Annotated protein sequence database

Research Protocol & Tool Sites

To Get More Software: TRY This Page !!
BioPD - at Interdepartmental Biological Building - University of Padova (Italy) 05.5.21
BOXSHADE 3.21 - Pretty Printing and Shading of Multiple-Alignment files - by the Bioinformatics Group at the ISREC (Swiss Institute for Experimental Cancer Research) in Epalinges s/Lausanne
Computational Biochemistry Research - at ETH: Eidgenossische Technische Hochschule Zurich
FramePlot.pl: v.0.5 - coding region prediction of high G+C-content bacteria by Jun Ishikawa at National Institute of Health (Japan)
Genome Information Research Center: Home Page in Japanese - at Osaka University (Japan)
A Guide to Structure Prediction (version 2)
IDEAS - Integrated Database and Extended Analysis System for Nucleic Acids and Proteins - at GenomeNET (Japan)
Molecular Biology Notebook - A comprehensive package for the hands-on teaching of Molecular Biology.
VSNS BioComputing Division Multiple Alignment Resource Page - VSNS BioComputing Division (Germany)
NIH Image Home Page - The most powerful "Image" soft
PCR Methods
- Long PCR Protocol
- PCR Jump Station - The ultimate Web page for information and links on all aspects of the Polymerase Chain Reaction (PCR)
- Primer3: Pick PCR primers from nucleotide sequence by Steve Rozen and Helen J. Skaletsky at Whitehead Institute for Biomedical Research (USA)
Molecular Biology Protocols
Search the Genentech Web Site - Genentech, Inc.
SOSUI - Secondary Structure Prediction of Membrane Proteins at GenomeNET (Japan)

since September 14, 1996

Atsushi Isoai, Ph.D., Director, Development Center, ASPEX Division, Asahi Glass Co.LTD., 1150 Hazawa, Kanagawa, Yokohama 221-8755, JAPAN

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This page was last modified on: June 02, 2007.