| Subject | Program | Summary | Server |
|---|---|---|---|
| Database Search |
WAIS | KW [Key Words Search] | DISC |
| SFgate | KW | DDBJ |
|
| getentry | ID [ID Search] | DDBJ |
|
| PubMed | KW | NCBI |
|
| Entrez | KW, ID | NCBI |
|
| Homology Search |
BLAST | BLASTN, BLASTP, BLASTX, TBLASTN | GenomeNET |
| FASTA | FASTA, TFASTA | GenomeNET |
|
| SSEARCH | Smith-Waterman algorithm | DDBJ |
|
| Sequence Analysis |
DNA to AA | Translation - The Protein Machine | EBI |
| PROSCAN | Predicts Promoter Regions (putative eukaryotic Pol II promoter sequences) | NIH |
|
| Signal Scan | Find and list homologies of signal sequences | NIH |
|
| SSPN | Splice Site Prediction by Neural Network | LBNL |
|
| Gene Feature | Prediction of Exon/Promoter/ORF etc. | BCM |
|
| ORF Finder | Graphical analysis tool which finds all ORFs | NCBI |
|
| TFSEARCH | Searching Transcription Factor Binding Sites | GenomeNET |
|
| MOTIF | Searching Protein Sequence Motifs | GenomeNET |
|
| BLOCK | Protein Motif Search | HFCRC |
|
| MEME | Multiple EM for Motif Elicitation | Pasteur |
|
| ClustalW | Multiple Sequence Alignment | GenomeNET |
|
| pI/Mw | Computation of the Theoretical pI and Mw | ExPASy |
|
| Restriction Enzyme Mapping |
WWWtacg | Restriction Enzyme Mapping and Analysis | UC Irvine |
| WebCutter | Restriction Enzyme Mapping and Analysis | Max Heiman |
|
| PCR |
Primer selection | Primer Design for PCR | VGC |
| Primer3 | Primer Design for PCR | MIT |
|
| Web Primer | Primer Design for PCR and Sequencing | SGD |
|
| Tm | Prediction of Tm | VGC |
|
| Prediction of Secondary Structure |
|||
| PredictProtein | PHDsec, PHDacc, PHDhtm, PHDtopology, PHDthreader, MaxHom, EvalSec | COLUMBIA UNIVERSITY |
|
| Sequence Format
|
BOXSHADE | Pretty Printing and Shading of Multiple-Alignmen | ISREC |
| ReadSeq | Sequence Format Exchange | ISHIKAWA Jun |
|
| Others |
Codon Usage | Codon Usage Tabulated from GenBank | DISC |
| MassSearch | Searching SwissProt or EMBL by protein mass after digestion | CBRG |
|
| PSORT | Analysis and Prediction of Protein Sorting Signals Coded in Amino Acid Sequence | Tokyo |
|
| PROTFAM | Protein Classification | MIPS |
Uploaded on March 30, 1997
Atsushi Isoai, Ph.D., Director, Development Center, ASPEX Division, Asahi Glass Co.LTD., 1150 Hazawa, Kanagawa, Yokohama 221-8755, JAPAN
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This page was last modified on: June 02, 2007.