Research Tool Sites for the Molecular Biology

My Favorite Sites

Essential Research Tools
- Tools for the Molecular Biology - Quick Access Table
- EMBOSS - Suite of bioinformatics tools. : EMBOSS (European Molecular Biology Open Software Suite) is a suite of free software tools for nucleotide and protein sequence analysis
- All-IN-ONE SEQ-ANALYZER - by Naohiro Inohara
- ExPASy - at Swiss Institute of Bioinformatics (SIB)
DataBases
- GenomeNET: Institute for Chemical Research, Kyoto University Human Genome Center: Kyoto, Institute of Medical Science, University of Tokyo: Tokyo (Japan)
- Restriction Enzyme Database - New England Biolabs, Inc.
Table
- Codon_usage
- Periodic table
Reference Sites
- GQuery - NCBI Global Cross-database Search (USA)
- NCBI PubMed - A search tool for accessing literature citations and linking to their full-text versions at publishers' Web sites - An experimental service of the National Center for Biotechnology Information (NCBI) atthe National Library of Medicine (NLM)
- ingenta - Reference search and document delivery service

World-Wide-Web Sites

European Bioinformation Institute (UK)
Human Genome Center: The Institute of Medical Science, The University of Tokyo
MRC - Human Genetics Unit - WWW Server(UK)
National Institute for Basic Biology: NIBB (Japan)
Theoretical Biophysics Group - at Beckman Institute for Advanced Science and Technology

Useful Database Sites

ATCC - American Type Culture Collection
DNA Data Bank of Japan : DDBJ - Center for Information Biology of Genetics - DDBJ Nucleotide Sequence Submission System On-Line Gene Submission (Japan)
EMBL Bioinformatics services
GenBank Database
A Gene Map of the Human Genome - The Gene Map web site is hosted by the National Center for Biotechnology Information : NCBI (USA)
National Collection of Yeast Cultures - atInstitute of Food (UK)
REBASE : Restriction Enzyme Database - New England Biolabs, Inc.
Restriction Enzyme Resource- atPromega Corporation (USA)

Protein Database and Resources
- GQuery : NCBI Global Cross-database Search (NCBI)
- ENZYME : Enzyme nomenclature database
- PROSITE : Dictionary of protein sites and patterns
- Protein Data Bank : An Information Portal to Biological Macromolecular Structures
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Research Protocol & Tool Sites
- To Get More Software: TRYThis Page !!
- BioPD - at Interdepartmental Biological Building - University of Padova (Italy) 05.5.21
- BOXSHADE - Pretty Printing and Shading of Multiple-Alignment files - by the Bioinformatics Group at the ISREC (Swiss Institute for Experimental Cancer Research) in Epalinges s/Lausanne
- FramePlot 4.0beta - coding region prediction of high G+C-content bacteria by Jun Ishikawa at National Institute of Health (Japan)
- Genome Information Research Center: Home Page inJapanese - at Osaka University (Japan) <6a1effe30f030b38216b5abf7857b5c3 />
- Early Career Researcher Toolbox - Free Online Molecular Biology Tools
- NIH Image Home Page - The most powerful "Image" soft
- PCR Tools
  - Comprehensive Web Tools for Advanced PCR Design, Quantitative Fluorescent PCR (QF-PCR), Genotyping, Loop-mediated Isothermal Amplification (LAMP), Virtual PCR, Gibson Assembly, Multiplex Tiling PCR panel design, Oligonucleotide Analysis, and Repeat Sequence Identification Comprehensive Web Tools for Advanced PCR Design, Quantitative Fluorescent PCR (QF-PCR), Genotyping, Loop-mediated Isothermal Amplification (LAMP), Virtual PCR, Gibson Assembly, Multiplex Tiling PCR panel design, Oligonucleotide Analysis, and Repeat Sequence Identification PCR Tools
  - Primer-BLAST
  - GenScript Online PCR Primers Designs Tool
- Protocol Online
- BIOSCI/Bionet - A set of electronic communication forums
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sinceSeptember 14, 1996

Atsushi Isoai, Ph.D.

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This page was last modified on: July 25, 2025.