Research Tool Sites for the Molecular Biology

• Essential Research Tools
  • Tools for the Molecular Biology - Quick Access Table
  • EMBOSS: Version 6.0.1 - a web-based graphical user interface to the EMBOSS suite of bioinformatics tools. : EMBOSS (European Molecular Biology Open Software Suite) is a suite of free software tools for nucleotide and protein sequence analysis
  • All-IN-ONE SEQ-ANALYZER - by Naohiro Inohara
  • ExPASy - at Swiss Institute of Bioinformatics (SIB)
  • Research Tools: [FRAME] - by Jun Ishikawa at National Institute of Health (Japan) : You can select[NONFRAME]: [JAPANESE-NONFRAME]
• DataBases
  • GenomeNET: Institute for Chemical Research, Kyoto University Human Genome Center: Kyoto, Institute of Medical Science, University of Tokyo: Tokyo (Japan)
  • Restriction Enzyme Database - New England Biolabs, Inc.
• Table
  • Amino Acid Information
  • Codon_usage
  • Periodic table
• Reference Sites
  • GQuery - NCBI Global Cross-database Search (USA)
  • Computational Molecular Biology at NIH and Beyond: atNIH: National Institutes of Health (USA)
  • NCBI PubMed - A search tool for accessing literature citations and linking to their full-text versions at publishers' Web sites - An experimental service of the National Center for Biotechnology Information (NCBI) at the National Library of Medicine (NLM)
  • PaperChase - PaperChase provides 9,337,834 references - MEDLINE | HealthSTAR | AIDSLINE | CANCERLIT
  • ingenta - Reference search and document delivery service
  • Chemfinder - Chemical Searching and Information Integration

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• Computional Biology and Informatics Laboratory - at Pennsylvenia University
• DNA Information and Stock Center: DISC - National Institute of Agrobiological Resources (Japan)
• European Bioinformation Institute (UK)
• GenomeNET: Institute for Chemical Research, Kyoto University Human Genome Center: Kyoto, Institute of Medical Science, University of Tokyo: Tokyo (Japan)
• Human Genome Center: Institute of Medical Science at The University of Tokyo (Japan)
• Jena Library of Biological Macromolecules - The JenaLib is aimed at a better dissemination of information on three-dimensional biopolymer structures
• MRC - Human Genetics Unit - WWW Server(UK)
• National Institute for Basic Biology: NIBB (Japan)
• Sheffield ChemDex - at University of Sheffield (UK)
• Theoretical Biophysics Group - NIH Resource for Concurrent Biological Computing at Beckman Institute for Advanced Science and Technology
• Weizmann Institute Genome and Bioinformatics: (Israel)

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• ATCC - American Type Culture Collection
• DNA Data Bank of Japan: DDBJ - Center for Information Biology of Genetics - DDBJ Nucleotide Sequence Submission System On-Line Gene Submission (Japan)
• EMBL Bioinformatics services
• Escherichia coli Databank - at The Graduate School of Biological Sciences: NAIST (Japan)
• E.coli Genetic Stock Center: CGSC - E. coli Stock Center Database at Yale University (USA)
• E. coli Genome Project: The purpose of this server is to provide a front-end graphical interface to our FTP site - at University of Wisconsin-Madison (USA)
• GenBank Database
• A Gene Map of the Human Genome - The Gene Map web site is hosted bythe National Center for Biotechnology Information: NCBI (USA)
• Online Research Resources - The National Center for Human Genome Research: Genome and Genetic Data at The National Center for Human Genome Research (NCHGR): The Human Genome Project for the National Institutes of Health (NIH)
• National Collection of Yeast Cultures - at Institute of Food (UK)
• NDB: Nucleic Acid Database - The goal of the Nucleic Acid Database Project is to assemble and distribute structural information about nucleic acids at The State University of New Jersey (USA)
• REBASE: Restriction Enzyme Database - New England Biolabs, Inc.
• Restriction Enzyme Resource - at Promega Corporation (USA)

• Protein Database and Resources
  • GQuery: NCBI Global Cross-database Search (NCBI)
  • ENZYME: Enzyme nomenclature database
  • PROSITE: Dictionary of protein sites and patterns
  • Protein Data Bank: An Information Portal to Biological Macromolecular Structures
  • SCOP: Structural Classification of Proteins. Release 1.32. 4432 PDB Entries (all through May 96). 8330 Domains. 169 Literature References. - at MRC Laboratory (UK)

• To Get More Software: TRYThis Page !!
• BioPD - at Interdepartmental Biological Building - University of Padova (Italy) 05.5.21
• BOXSHADE 3.21 - Pretty Printing and Shading of Multiple-Alignment files - by the Bioinformatics Group at the ISREC (Swiss Institute for Experimental Cancer Research) in Epalinges s/Lausanne
• Computational Biochemistry Research - at ETH: Eidgenossische Technische Hochschule Zurich
• FramePlot.pl: v.0.5 - coding region prediction of high G+C-content bacteria by Jun Ishikawa at National Institute of Health (Japan)
• Genome Information Research Center: Home Page inJapanese - at Osaka University (Japan)
• Molecular Biology Notebook - A comprehensive package for the hands-on teaching of Molecular Biology.
• VSNS BioComputing Division Multiple Alignment Resource Page - VSNS BioComputing Division (Germany)
• NIH Image Home Page - The most powerful "Image" soft
• PCR Methods
  • Long PCR Protocol
  • Microbiology Gateway - Information, current research and relevant technology
• Molecular Biology Protocols
• BIOSCI/Bionet - A set of electronic communication forums

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since September 14, 1996

Atsushi Isoai, Ph.D.

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This page was last modified on: December 29, 2013.